| EST name | EST sequence |
| gi|39789025|gb|CK243936.1|CK243936 | GCCTCTCATTCGCTTGGTGCAGGTCGGGACCTACCTCGCCGGCACAATGGCGGTAGCTGACGGCGACGCCAGCGTACCGG TAAAAACTAATTTTTTACATGTTGTCTGTGGCGTAGTTTGGGTCCCGCCTTGCATCAACTGAATAGGAGACTGCGGTGAA TTTTGTTTCGACGAAATCAGCTTTGTTATGGATCGATCTAATATCTACAGCTTGTTTTACATGAGCTTAATGTAGGTTCT TTATTGAATGGTGCCCATTTTGATATGCTAGAAGATTGAAGAACTCCAATTTTGATCAAATAAGAAAAAAACAGAAAAAG GAATTACAACGTATGATGGCCTCGAGAGCTGCATACTGAACAGTCAGTCTTATGACAATGAAAGTGCCAATAGCAGAGTT GATGTTGGTGTTACAGATTCTCTATATGATGACGACTCGAGTAGCTCTTCTAGCAACAATGTTTTTGGATCATTTTTATC TCACTGGACAACAAGCCCTCAACATTTTTATGTGAACGAAAAAACTGGTTATACAACACAACTTTCAGATGTGGAAATGA TGAAAGAGAGGTTTGCAAAGTTGTTGCTCGGGGAGGATGTAACCGGAGGAAGCAAGGGGGTTTCTACTGCATTAGCATTG TCTAATGCCATTACAAATCTTGCAGCGTCTGTGTTTGGAGAGCTGTGGAAATTGGAGCCACTTGCAGAGGAACAAAAGAT GAAATGGAGAACGGAAATGGATTGGTTACTCTCGCCTACCAATCATATGA |
Most similar to sp|Q93ZY2|ROGF1_ARATH
>>sp|P14277|CB2F_SOLLC Chlorophyll a-b binding protein 3B,
chloroplastic (Fragments) OS=Solanum lycopersicum
GN=CAB3B PE=3 SV=1
Length = 267
Score = 128 bits (321), Expect(2) = 2e-32
Identities = 58/74 (78%), Positives = 69/74 (93%)
Frame = +3
Query: 507 SLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVNPLYPGGSFNPLGLGDNPEGLPEL 686
SL+HAQSILAIWACQVVLMGA+EGYR+AGGPLGEVV+PLYPGGSF+PLGL ++PE EL
Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 211
Query: 687 QVKDLRNGRLAMVS 728
+VK+++NGRLAM S
Sbjct: 212 KVKEIKNGRLAMFS 225
Score = 32.7 bits (73), Expect(2) = 2e-32
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 766 GKGPL*KLANHFANPVNKKRW 828
GKGPL LA+H A+PVN W
Sbjct: 237 GKGPLENLADHIADPVNNNAW 257
>sp|P14276|CB2E_SOLLC Chlorophyll a-b binding protein 3A,
chloroplastic (Fragments) OS=Solanum lycopersicum
GN=CAB3A PE=3 SV=1
Length = 267
Score = 128 bits (321), Expect(2) = 2e-32
Identities = 58/74 (78%), Positives = 69/74 (93%)
Frame = +3
Query: 507 SLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVNPLYPGGSFNPLGLGDNPEGLPEL 686
SL+HAQSILAIWACQVVLMGA+EGYR+AGGPLGEVV+PLYPGGSF+PLGL ++PE EL
Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 211
Query: 687 QVKDLRNGRLAMVS 728
+VK+++NGRLAM S
Sbjct: 212 KVKEIKNGRLAMFS 225
Score = 32.7 bits (73), Expect(2) = 2e-32
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 766 GKGPL*KLANHFANPVNKKRW 828
GKGPL LA+H A+PVN W
Sbjct: 237 GKGPLENLADHIADPVNNNAW 257
>sp|P14275|CB2C_SOLLC Chlorophyll a-b binding protein 1C,
chloroplastic (Fragments) OS=Solanum lycopersicum
GN=CAB1C PE=3 SV=1
Length = 265
Score = 128 bits (321), Expect(2) = 2e-32
Identities = 58/74 (78%), Positives = 69/74 (93%)
Frame = +3
Query: 507 SLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVNPLYPGGSFNPLGLGDNPEGLPEL 686
SL+HAQSILAIWACQVVLMGA+EGYR+AGGPLGEVV+PLYPGGSF+PLGL ++PE EL
Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 209
Query: 687 QVKDLRNGRLAMVS 728
+VK+++NGRLAM S
Sbjct: 210 KVKEIKNGRLAMFS 223
Score = 32.7 bits (73), Expect(2) = 2e-32
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 766 GKGPL*KLANHFANPVNKKRW 828
GKGPL LA+H A+PVN W
Sbjct: 235 GKGPLENLADHLADPVNNNAW 255
>sp|P14274|CB2A_SOLLC Chlorophyll a-b binding protein 1A,
chloroplastic (Fragments) OS=Solanum lycopersicum
GN=CAB1A PE=3 SV=1
Length = 265
Score = 128 bits (321), Expect(2) = 2e-32
Identities = 58/74 (78%), Positives = 69/74 (93%)
Frame = +3
Query: 507 SLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVNPLYPGGSFNPLGLGDNPEGLPEL 686
SL+HAQSILAIWACQVVLMGA+EGYR+AGGPLGEVV+PLYPGGSF+PLGL ++PE EL
Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 209
Query: 687 QVKDLRNGRLAMVS 728
+VK+++NGRLAM S
Sbjct: 210 KVKEIKNGRLAMFS 223
Score = 32.7 bits (73), Expect(2) = 2e-32
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 766 GKGPL*KLANHFANPVNKKRW 828
GKGPL LA+H A+PVN W
Sbjct: 235 GKGPLENLADHLADPVNNNAW 255
>sp|P10707|CB2D_SOLLC Chlorophyll a-b binding protein 1D (Fragment)
OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1
Length = 116
Score = 128 bits (321), Expect(2) = 2e-32
Identities = 58/74 (78%), Positives = 69/74 (93%)
Frame = +3
Query: 507 SLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVNPLYPGGSFNPLGLGDNPEGLPEL 686
SL+HAQSILAIWACQVVLMGA+EGYR+AGGPLGEVV+PLYPGGSF+PLGL ++PE EL
Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 60
Query: 687 QVKDLRNGRLAMVS 728
+VK+++NGRLAM S
Sbjct: 61 KVKEIKNGRLAMFS 74
Score = 32.7 bits (73), Expect(2) = 2e-32
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 766 GKGPL*KLANHFANPVNKKRW 828
GKGPL LA+H A+PVN W
Sbjct: 86 GKGPLENLADHLADPVNNNAW 106
>sp|P14584|CB21_RAPSA Chlorophyll a-b binding of LHCII type 1
protein (Fragment) OS=Raphanus sativus PE=2 SV=1
Length = 124
Score = 120 bits (300), Expect(2) = 5e-30
Identities = 59/82 (71%), Positives = 69/82 (84%), Gaps = 1/82 (1%)
Frame = +3
Query: 486 LDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAG-GPLGEVVNPLYPGGSFNPLGLGD 662
LDYLGNPSL+HAQSILAIWA QV+LMGA+EGYRVAG GPLGE + LYPGGSF+PL
Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLT 60
Query: 663 NPEGLPELQVKDLRNGRLAMVS 728
+PE EL+VK+++NGRLAM S
Sbjct: 61 DPEAFAELKVKEIKNGRLAMFS 82
Score = 32.7 bits (73), Expect(2) = 5e-30
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 766 GKGPL*KLANHFANPVNKKRW 828
GKGPL LA+H A+PVN W
Sbjct: 94 GKGPLENLADHLADPVNNNAW 114
>sp|Q01667|CAB6_ARATH Chlorophyll a-b binding protein 6,
chloroplastic OS=Arabidopsis thaliana GN=LHCA1 PE=1 SV=1
Length = 241
Score = 97.4 bits (241), Expect(2) = 7e-22
Identities = 62/167 (37%), Positives = 89/167 (53%), Gaps = 2/167 (1%)
Frame = +3
Query: 240 LSGAP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 416
+ G P P+YL G PGD+G+D GL P + +E E+IH RWAML G + PE L
Sbjct: 49 MPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL- 107
Query: 417 RNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAG 593
G W KA GG YLGNP + ++ I A + + + +E R
Sbjct: 108 ------GYGNWVKAQEWAALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQR--- 156
Query: 594 GPLGEVVNPLYPGGSFNPLGLGDNPEGLPELQVKDLRNGRLAMVSQV 734
+ YPGG+F+PLG +P+ L EL+VK+++NGRLA+++ V
Sbjct: 157 SMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFV 203
Score = 28.1 bits (61), Expect(2) = 7e-22
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 736 GFLPPSHPHPGKGPL*KLANHFANP 810
GF +PG GPL LA H A+P
Sbjct: 204 GFCVQQSAYPGTGPLENLATHLADP 228
>sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7,
chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1
Length = 270
Score = 103 bits (258), Expect(2) = 1e-21
Identities = 64/185 (34%), Positives = 98/185 (52%), Gaps = 13/185 (7%)
Frame = +3
Query: 213 PDRVLYLGPLSGAPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 392
PDR L+ PP +L G PGD+G+D GL++DPE+ N++ E++H RWAMLGA G
Sbjct: 63 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAG 120
Query: 393 CVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVV 557
PELL + G+ W+ AG Q + + +L + +L WA ++
Sbjct: 121 IFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADII 173
Query: 558 LMGAIE------GYRVAGGPLGEVVNPLYPGGS-FNPLGLGD-NPEGLPELQVKDLRNGR 713
G + ++ G +G YPGG F+PLG G +P + EL+ K+++NGR
Sbjct: 174 KPGCVNTDPIFPNNKLTGTDVG------YPGGLWFDPLGWGSGSPAKIKELRTKEIKNGR 227
Query: 714 LAMVS 728
LAM++
Sbjct: 228 LAMLA 232
Score = 20.8 bits (42), Expect(2) = 1e-21
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +1
Query: 754 HPHPGKGPL*KLANHFANP 810
H + G GP+ L H A+P
Sbjct: 240 HIYTGTGPIDNLFAHLADP 258
>sp|P13869|CB12_PETHY Chlorophyll a-b binding protein, chloroplastic
OS=Petunia hybrida PE=2 SV=1
Length = 270
Score = 103 bits (257), Expect(2) = 2e-21
Identities = 65/185 (35%), Positives = 96/185 (51%), Gaps = 13/185 (7%)
Frame = +3
Query: 213 PDRVLYLGPLSGAPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 392
PDR L+ PP +L G PGD+G+D GL +DPE+ N + E++HSRWAMLGA G
Sbjct: 63 PDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAG 120
Query: 393 CVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVV 557
PE L + GV W+ AG Q + + +L + +L WA ++
Sbjct: 121 IFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADII 173
Query: 558 LMGAIE------GYRVAGGPLGEVVNPLYPGGS-FNPLGLGD-NPEGLPELQVKDLRNGR 713
G + ++ G +G YPGG F+PLG G +P + EL+ K+++NGR
Sbjct: 174 KPGCVNTDPIFPNNKLTGTDVG------YPGGLWFDPLGWGSGSPAKIKELRTKEIKNGR 227
Query: 714 LAMVS 728
LAM++
Sbjct: 228 LAMLA 232
Score = 20.8 bits (42), Expect(2) = 2e-21
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +1
Query: 754 HPHPGKGPL*KLANHFANP 810
H + G GP+ L H A+P
Sbjct: 240 HIYTGTGPIDNLFAHLADP 258
>sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21,
chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1
Length = 245
Score = 94.4 bits (233), Expect(2) = 6e-21
Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 1/161 (0%)
Frame = +3
Query: 255 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 434
P++L G PGD+G+D GL+ PE F + +E E+ H RWAML G + PE L
Sbjct: 55 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL------- 107
Query: 435 GEAVWFKAGS-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEV 611
G W KA +G YLGNP + ++ I A + + + E R +
Sbjct: 108 GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDP 162
Query: 612 VNPLYPGGSFNPLGLGDNPEGLPELQVKDLRNGRLAMVSQV 734
YPGG+F+PLG +P EL++K+++NGRLAM++ V
Sbjct: 163 EKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFV 203
Score = 28.1 bits (61), Expect(2) = 6e-21
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 736 GFLPPSHPHPGKGPL*KLANHFANP 810
GF +PG GPL LA H A+P
Sbjct: 204 GFCVQQSAYPGTGPLENLATHLADP 228
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q93ZY2|ROGF1_ARATH Rop guanine nucleotide exchange factor 1
OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2
Length = 548
Score = 113 bits (283), Expect = 1e-24
Identities = 52/70 (74%), Positives = 64/70 (91%)
Frame = +2
Query: 542 LSDVEMMKERFAKLLLGEDVTGGSKGVSTALALSNAITNLAASVFGELWKLEPLAEEQKM 721
LS++EMMKERFAKLLLGED++GG KGV TALA+SNAITNL+A+VFGELW+LEPLA ++K
Sbjct: 88 LSEIEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKA 147
Query: 722 KWRTEMDWLL 751
WR E++WLL
Sbjct: 148 MWRRELEWLL 157